Functional brain networks: intra and inter-subject variability in healthy individuals and patients with neurological or neuropsychiatric diseases.

The projects of this thesis sits at the intersection between classical neuroscience and aspects related to engineering, signals’ and neuroimaging processing. Each of the three years has been dedicated to specific projects carried out on distinct datasets, groups of individuals/patients and methods, putting great emphasis on multidisciplinarity and international mobility. The studies carried out in Cagliari were based on EEG (electroencephalography), and the one conducted abroad was developed on functional magnetic resonance imaging (fMRI) data. The common thread of the project concerns variability and stability of individuals' features related primarily to functional connectivity and network, as well as to the periodic and aperiodic components of EEG power spectra, and their possible use for clinical purposes. In the first study (Fraschini et al., 2019) we aimed to investigate the impact of some of the most commonly used metrics to estimate functional connectivity on the ability to unveil personal distinctive patterns of inter-channel interaction. In the second study (Demuru et al., 2020) we performed a comparison between power spectral density and some widely used nodal network metrics, both at scalp and source level, with the aim of evaluating their possible association. The first first-authored study (Pani et al., 2020)was dedicated to investigate how the variability due to subject, session and task affects electroencephalogram(EEG) power, connectivity and network features estimated using source-reconstructed EEG time-series of healthy subjects. In the study carried out with the supervision of Prof. Fornito (https://doi.org/10.1016/j.pscychresns.2020.111202) during the experience at the Brain, Mind and Society Research Hub of Monash University, partial least square analysis has been applied on fMRI data of an healthy cohort to evaluate how different specific aspects of psychosis-like experiences related to functional connectivity. Due to the pandemic of Sars-Cov-2 it was impossible to continue recording the patients affected by neurological diseases (Parkinson’s, Diskynesia) involved in the study we planned for the third year, that should have replicated the design of the first first-authored one, with the aim of investigate how individual variability/stability of functional brain networks is affected by diseases. For the aforementioned reason, we carried out the last study on a dataset we finished to record in February 2020. The analysis has the aim of investigate whether it is possible by using 19 channels sleep scalp EEG to highlight differences in the brain of patients affected by non-rem parasomnias and sleep-related hypermotor epilepsy, when considering the periodic and aperiodic component of EEG power spectra

How time window influences biometrics performance: an EEG-based fingerprints connectivity study

EEG-based biometric represents a relatively recent research field that aims to recognize individuals based on their recorded brain activity by means of electroencephalography (EEG). Among the numerous features that have been proposed, connectivity-based approaches represent one of the more promising methods tested so far. In this paper, we investigate how the performance of an EEG biometric system varies with respect to different time windows to understand if it is possible to define the optimal duration of EEG signal that can be used to extract those distinctive features. Overall, the results have shown a pronounced effect of the time window on the biometric performance measured in terms of EER (equal error rate) and AUC (area under the curve), with an evident increase of the biometric performance with an increase of the time window. In conclusion, we want to highlight that EEG connectivity has the potential to represent an optimal candidate as EEG fingerprint and that, in this context, it is very important to define a sufficient time window able to collect the subject specific features. Moreover, our preliminary results show that extending the window size beyond a certain maximum does not improve biometric systems' performance

Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.

The QT interval, an electrocardiographic measure reflecting myocardial repolarization, is a heritable trait. QT prolongation is a risk factor for ventricular arrhythmias and sudden cardiac death (SCD) and could indicate the presence of the potentially lethal mendelian long-QT syndrome (LQTS). Using a genome-wide association and replication study in up to 100,000 individuals, we identified 35 common variant loci associated with QT interval that collectively explain ∼8-10% of QT-interval variation and highlight the importance of calcium regulation in myocardial repolarization. Rare variant analysis of 6 new QT interval-associated loci in 298 unrelated probands with LQTS identified coding variants not found in controls but of uncertain causality and therefore requiring validation. Several newly identified loci encode proteins that physically interact with other recognized repolarization proteins. Our integration of common variant association, expression and orthogonal protein-protein interaction screens provides new insights into cardiac electrophysiology and identifies new candidate genes for ventricular arrhythmias, LQTS and SCD

Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector

A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements

Genome-wide Analyses Identify KIF5A as a Novel ALS Gene

To identify novel genes associated with ALS, we undertook two lines of investigation. We carried out a genome-wide association study comparing 20,806 ALS cases and 59,804 controls. Independently, we performed a rare variant burden analysis comparing 1,138 index familial ALS cases and 19,494 controls. Through both approaches, we identified kinesin family member 5A (KIF5A) as a novel gene associated with ALS. Interestingly, mutations predominantly in the N-terminal motor domain of KIF5A are causative for two neurodegenerative diseases: hereditary spastic paraplegia (SPG10) and Charcot-Marie-Tooth type 2 (CMT2). In contrast, ALS-associated mutations are primarily located at the C-terminal cargo-binding tail domain and patients harboring loss-of-function mutations displayed an extended survival relative to typical ALS cases. Taken together, these results broaden the phenotype spectrum resulting from mutations in KIF5A and strengthen the role of cytoskeletal defects in the pathogenesis of ALS.Peer reviewe